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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ctsmTMB" in publications use:'
type: software
license: GPL-3.0-only
title: 'ctsmTMB: Continuous Time Stochastic Modelling using Template Model Builder'
version: 1.1.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ctsmTMB
abstract: Perform state and parameter inference, and forecasting, in stochastic state-space
  systems using the 'ctsmTMB' R6 class. This class provides a user-friendly interface
  for working with stochastic state space models. Inference is based on maximum likelihood
  estimation, with derivatives efficiently computed through automatic differentiation
  enabled by the 'TMB'/'RTMB' packages (Kristensen et al., 2016) <https://doi.org/10.18637/jss.v070.i05>.
  The available inference methods include Kalman filters, in addition to a Laplace
  approximation-based smoothing method. For further details of these methods refer
  to the documentation of the 'CTSMR' package <https://ctsm.info/ctsmr-reference.pdf>
  and Thygesen (2025) <https://doi.org/10.48550/arXiv.2503.21358>. Forecasting capabilities
  include moment predictions and stochastic path simulations implemented in 'C++'
  using 'Rcpp' (Eddelbuettel et al., 2018) <https://doi.org/10.1080/00031305.2017.1375990>
  for computational efficiency.
authors:
- family-names: Vetter
  given-names: Phillip
  email: pbrve@dtu.dk
preferred-citation:
  type: manual
  title: 'ctsmTMB: Continuous Time Stochastic Modelling using Template Model Builder'
  authors:
  - family-names: Vetter
    given-names: Phillip Brinck
    email: pbrve@dtu.dk
  - family-names: Møller
    given-names: Jan K.
  - family-names: Thygesen
    given-names: Uffe
  - family-names: Bacher
    given-names: Peder
  - family-names: Madsen
    given-names: Henrik
  year: '2025'
  notes: R Package Version 1.0
  url: https://github.com/phillipbvetter/ctsmTMB
repository: https://phillipbvetter.r-universe.dev
repository-code: https://github.com/phillipbvetter/ctsmTMB
commit: 156a377563ac4a8f0b644fa0e74a162286262169
url: https://github.com/phillipbvetter/ctsmTMB
date-released: '2026-02-01'
contact:
- family-names: Vetter
  given-names: Phillip
  email: pbrve@dtu.dk